A fundamental goal of biology is to understand the cell as a system of interacting components and especially, almost every biological process is mediated by a network of molecular interactions. In particular, there has been a considerable amount of research devoted to the discovery and exploration of interactions between proteins in the last decade. Since many cellular activities are a result of protein interactions, proteins often interact with other proteins to perform their functions, and form a complex biological system, i.e., a protein-protein interaction (PPI) network. This powerful way of representing and analyzing the vast corpus of PPI data describes the interaction relationship among proteins in a cell. Furthermore, knowledge about the topology of a PPI network in one organism can yield insights about not only the networks of similar organisms, but also the function of their components. Hence comparison between protein interaction networks is becoming central to systems biology. We have collaborated with the MIT team and developed global alignment algorithms for performing comparative analysis of multiple biological networks (more details).